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Ingesting, validating, long-term storage and access of Flow Cytometer data
CNRS; NERC-BODC; VLIZ; ICES (2019). Ingesting, validating, long-term storage and access of Flow Cytometer data. Deliverable D9.13. SeaDataCloud: [s.l.]. 43 pp.
Available in  Authors 
    Vlaams Instituut voor de Zee: Open access 338952 [ download pdf ]
Keyword
    Marine/Coastal
Authors  Top 
  • CNRS
  • NERC-BODC
  • VLIZ
  • ICES
Abstract
    This document highlight the way to integrate the flow cytometry datasets into a database that fits interoperability and meets SDC ingesting procedure in order to make the datasets available through international portals. The works presents the first steps of standardisation of vocabulary dedicated to flow cytometry variables (optical units, abundance) and resolved functional groups (phytoplankton and heterotrophic prokaryotes) thanks to a consortium of international experts. The database and workflow from the sample to the SDC portal, ODV and EMODNET are presented, as well as the first datasets available online.
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